API Reference

Cellestial is built on top of Lets-Plot. For further customization options, functionalities, utilities and many more please refer to Lets-Plot API.

Base

plot	Base plot (for plots without data wrangling).

Basic

bar	Bar Plot.
heatmap	Heatmap.
scatter	Scatter Plot.

Common

xyplot	Scatter Plot.
xyplots	Scatter Plots.

Special

dotplot

Dotplot.

Dimensionality Reduction

dimensional	Dimensionality reduction plot.
umap	UMAP Dimensionality reduction plot.
pca	PCA Dimensionality reduction plot.
tsne	tSNE Dimensionality reduction plot.
expression	Dimensionality reduction plot of expression data.
dimensionals	Grid of dimensionality reduction plots.
umaps	Grid of dimensionality reduction plots.
pcas	Grid of dimensionality reduction plots.
tsnes	Grid of dimensionality reduction plots.
expressions	Grid of dimensionality reduction plots.

Distributions

boxplot	Boxplot.
violin	Violin Plot.
boxplots	Boxplots.
violins	Violin Plots.

Data Frames

build_frame

Build a DataFrame from an AnnData object.

Layers

cluster_outlines	Returns a Layer of geom_path that outlines the given clusters.
arrow_axis	Adds arrows as the X and Y axis to the plot.

Utility

show_colors	Show a grid of hand-picked colors.
get_mapping	Returns the mapping of the plot as a dict.
retrieve	Retrieves the dataframe from a PlotSpec or SupPlotsSpec using the index.
slice	Slice a ggrid (SupPlotsSpec) objects with given index.