cellestial.xyplot#

xyplot(data: AnnData, x: str, y: str, *, mapping: FeatureSpec | None = None, axis: Literal[0, 1] | None = None, tooltips: Literal['none'] | Sequence[str] | FeatureSpec | None = None, interactive: bool = False, observations_name: str = 'Barcode', variables_name: str = 'Variable', include_dimensions: bool | int = False, **point_kwargs) → PlotSpec#

Scatter Plot.

Parameters:

  • data (AnnData) – The AnnData object of the single cell data.

  • x (str) – The key for the x-axis.

  • y (str) – The key for the y-axis.

  • mapping (FeatureSpec | None, default None) – Additional aesthetic mappings for the plot, the result of aes().

  • axis ({0,1} | None, default None) – axis of the data, 0 for observations and 1 for variables.

  • tooltips ({'none'} | Sequence[str] | FeatureSpec | None, default None) – Tooltips to show when hovering over the geom. Accepts Sequence[str] or result of layer_tooltips() for more complex tooltips. Use ‘none’ to disable tooltips.

  • interactive (bool, default False) – Whether to make the plot interactive.

  • observations_name (str, default 'Barcode') – The name to give to barcode (or index) column in the dataframe.

  • variables_name (str, default 'Variable') – The name to give to variable index column in the dataframe.

  • include_dimensions (bool | int, default False) – Whether to include dimensions in the DataFrame. Providing an integer will limit the number of dimensions to given number.

  • **point_kwargs – Additional parameters for the geom_point layer. For more information on geom_point parameters, see: https://lets-plot.org/python/pages/api/lets_plot.geom_point.html

Returns:

PlotSpec – Scatter plot.

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